I basically feel the same way as you!
I've ID'd as genderqueer for quite a few years, started hormones almost 6 months ago, and intend to legally, socially, and medically (srs) transition to "female". I've more or less reconciled (with the help of my therapist) my transition plans with my gender identity. Being genderqueer isn't going to change once I finish transition!
The way I think about it, I'm just going from genderqueer "boy" to genderqueer "girl" with respect to how the world sees me, more than how I relate to myself.
Congratulations on starting on your transition path!