Carrie, hugs
I think having such a shock takes time for you wife to adjust. As she realizes you are there for her and she is there for you, the emotions may settle out and you may find being yourself and her accepting the new reality makes you and her closer, perhaps not.
I had a lifetime to know who I am and she has had 11 months. If I said I am doing this and she said no, what would I say? But, if she said that hurts me and cries than what would you say? Sometimes I feel manipulated.
My wife and I went out this morning and spent time in town, had lunch and spent some time together. She said she really enjoyed the day. So we really enjoy being together and love each other. You may want to consider some time together in a neutral location for fun.
I can not make my wife happy. I am not responsible to make my wife happy. We love each other and I want (need) to become aligned. Hence the dilemma. If we had a bad marriage and added this to the mix then it would be over. But we had a very good (not great) marriage and I added this into the mix. We may end up just friends or divorced. If I go back she will become a widow. I really like where I am going, so forward I go with transition.
In a year or two my identity may be very strong and I may look at the situation differently and I may drive a decision. Perhaps she knows I am growing and is scared she will be left out. Perhaps she just does not want change. She is cis, hetero female and wants a guy and I no longer fit the bill. Lots of change causes lots of emotions. The more you discuss the change the more it will sink in and be less scary.
I expected to be divorced by now