It really all depends on the temple and community that you are a part of. In the West, it is a hit and miss, but if you go to India, unless you pass very well, then it would be a complete miss.
Unfortunately, Indian culture can be quite rigid in terms of gender segregation and roles, and if you end up being gender-queer, or bigendered, or cross-dressing, you will be disrespected in the community and even shamed!
But Hinduism itself shouldn't be hateful towards all trans people, since we are part of the tritiya prakrti, or third sex. This would include gays, lesbians, trans, and bisexuals!