*hugs* it does take time. It took my wife almost 4 months to really accept me. Bring her along to your counselor, they can help explain and help her cope. Do try to be as patient with her as possible. For her she was just told her husband has died. That is how mine explained how it felt for her. I can say just from personal experience more and more couples are staying together throughout transition. Several couples I found through a local trans support group. This helped her a lot, because she knows she's not alone. Also Google spouse of a trans or things along that line. There are things for her. She needs a support system as much as you do. Best of luck in your journey.