Generally vitamins have most of the same stuff regardless of target gender, but vitamins 'for women' have more calcium, iron and zinc, which the female body generally needs a lot more of than men. Female bodies generally make less bone than male bodies and lose it at a faster rate, and the female body seems to need much more calcium in general for a lot of reasons. I'm not sure how this effects transmen though, because the testosterone might effect the way their body uses calcium and how much they need.
If you are worried you might not be getting enough of certain essential vitamins and minerals you should probably ask your doctor about it, or maybe an endocrinologist? I'm not sure, but I don't think you will do much harm by taking the ones targeted male bodied folk.