It's not transgender themed, but Kafka on the Shore, by Haruki Murakami, has a wonderful character who's FTM. He's a librarian described in a way that makes me think he looks like Masafumi Gotoh or Kazuhito Ohba's character in Versus...

but he's gay (why, bishonen?)...
Ah well. Murakami did a great job of presenting a character who's not only trans, not only FTM, but also gay (showing a great deal of insight into how diverse we are), and of course wrote the main character, who's a teenager on the run, to be completely confused and not at all understanding, but very sympathetic.
"I don't care what you are. Whatever you are, I like you,"...
"I know I'm a
little different from everyone else, but I'm still a regular human being. That's what I'd like you to realize. I'm just a regular person, not some monster. I feel the same things everyone else does, act the same way. Sometimes, though, that small difference feels like an abyss. But I guess there's not much I can do about it."
Beautiful. I know the feeling exactly.