NO, being inter sexed does not disqualify you from being transgender, there are inter sexed babies that are assigned a gender and still later in life feel that they have the wrong body, i just met a ftm who was also inter sexed, so yes it happens. I just also saw on Anderson Cooper's talk show a mtf who has a form of inter sex, in my case I have mild ais, in hers she had xxy chromosomes, these are mild cases, there are many many types of inter sex conditions, and doctors yet still make it a practice to assign a sex and fit them into a binary system, which is wrong, you should allow the child to be able to tell you who they are, whether they are male or female, or if they want to remain as they are in between.
I post in blue, because its my favorite color, I like to post in all sorts of colors actually.